Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Tpau_0672KEGG: nfa:nfa51640 hypothetical protein. (155 aa)    
Predicted Functional Partners:
Tpau_0669
PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; Uroporphyrinogen III synthase HEM4; KEGG: nfa:nfa51680 putative uroporphyrin-III C- methyltransferase/uroporphyrinogen-III synthase.
  
    0.932
Tpau_0670
Porphobilinogen synthase; KEGG: rop:ROP_17220 delta-aminolevulinic acid dehydratase; PFAM: delta-aminolevulinic acid dehydratase; Belongs to the ALAD family.
  
    0.853
Tpau_0671
KEGG: rop:ROP_17210 hypothetical membrane protein.
       0.836
hemC
Porphobilinogen deaminase; Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps. Belongs to the HMBS family.
  
    0.807
Tpau_2132
KEGG: rer:RER_32090 hypothetical protein.
  
     0.750
Tpau_0118
KEGG: mav:MAV_0179 hypothetical protein.
  
     0.738
Tpau_2076
KEGG: rop:ROP_69960 hypothetical membrane protein.
  
     0.734
Tpau_1797
KEGG: rha:RHA1_ro06774 hypothetical protein.
  
     0.733
Tpau_1779
KEGG: rer:RER_27430 hypothetical protein.
  
     0.729
Tpau_2240
KEGG: rop:ROP_69240 hypothetical membrane protein.
  
     0.729
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
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