Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Tpau_0681KEGG: ach:Achl_0059 agmatine deiminase; PFAM: Porphyromonas-type peptidyl-arginine deiminase; Belongs to the agmatine deiminase family. (348 aa)    
Predicted Functional Partners:
Tpau_0172
Agmatine deiminase; KEGG: mab:MAB_0588c peptidyl-arginine deiminase; PFAM: Porphyromonas-type peptidyl-arginine deiminase; Belongs to the agmatine deiminase family.
  
  
 
0.912
Tpau_0680
PFAM: Amidase; KEGG: mkm:Mkms_5239 amidase.
 
   
 0.884
Tpau_0682
Putrescine oxidase; KEGG: mlu:Mlut_10320 monoamine oxidase; PFAM: amine oxidase; FAD dependent oxidoreductase; HI0933 family protein.
 
   
 0.813
Tpau_0679
PFAM: amino acid permease-associated region; KEGG: msm:MSMEG_1625 amino acid transporter, putative.
 
   
 0.810
Tpau_0838
PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: msm:MSMEG_3555 hydrolase.
  
 0.798
Tpau_0678
PFAM: acyl-CoA oxidase domain protein; acyl-CoA dehydrogenase domain protein; KEGG: mab:MAB_3588 putative acyl-CoA oxidase.
       0.615
Tpau_0683
Transcriptional regulator, TetR family; PFAM: regulatory protein TetR; Tetracyclin repressor domain protein; KEGG: mlu:Mlut_10310 transcriptional regulator, TetR family.
 
     0.520
Tpau_1415
PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: rer:RER_05780 hydrolase.
 
  
 0.457
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
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