Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Tpau_0688PFAM: Phosphoglycerate mutase; KEGG: rer:RER_16670 hypothetical protein. (209 aa)    
Predicted Functional Partners:
Tpau_0689
PFAM: Redoxin domain protein; alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; KEGG: mgi:Mflv_0052 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen.
  
 
 0.958
hemL
Glutamate-1-semialdehyde-2,1-aminomutase; KEGG: nfa:nfa51600 glutamate-1-semialdehyde aminotransferase; TIGRFAM: glutamate-1-semialdehyde-2,1-aminomutase; PFAM: aminotransferase class-III.
  
    0.918
Tpau_0690
PFAM: cytochrome c biogenesis protein transmembrane region; KEGG: rer:RER_16690 cytochrome c biogenesis protein CcdA.
  
    0.848
Tpau_0691
PFAM: ResB family protein; KEGG: rer:RER_16700 cytochrome c biogenesis protein ResB.
  
    0.847
Tpau_0692
Cytochrome c-type biogenesis protein CcsB; KEGG: rha:RHA1_ro02032 cytochrome c assembly membrane protein; TIGRFAM: cytochrome c-type biogenesis protein CcsB; PFAM: cytochrome c assembly protein.
  
    0.846
Tpau_3948
PFAM: aminotransferase class-III; KEGG: bmr:BMI_II1109 glutamate-1-semialdehyde 2,1- aminomutase, putative; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
  
    0.663
Tpau_1882
KEGG: mab:MAB_3005c hypothetical protein.
  
     0.614
Tpau_1528
KEGG: nfa:nfa17040 hypothetical protein.
  
     0.606
Tpau_2801
PFAM: DNA polymerase III delta; KEGG: nfa:nfa13940 hypothetical protein.
 
     0.599
Tpau_2639
PFAM: protein of unknown function YGGT; KEGG: rop:ROP_08090 hypothetical membrane protein.
 
     0.596
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
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