Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
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Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Tpau_0693KEGG: rer:RER_16740 hypothetical protein; TIGRFAM: DNA binding domain protein, excisionase family; PFAM: regulatory protein MerR. (79 aa)    
Predicted Functional Partners:
Tpau_0694
KEGG: rer:RER_16750 hypothetical protein.
       0.684
Tpau_1047
Integral membrane sensor signal transduction histidine kinase; KEGG: rer:RER_21360 two-component histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein.
  
     0.666
Tpau_0695
PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: rha:RHA1_ro02027 cysteine synthase.
       0.658
Tpau_1108
TIGRFAM: anti-sigma factor; KEGG: nfa:nfa45830 putative anti-sigma factor.
  
     0.516
Tpau_2436
PFAM: Methyltransferase type 11; UbiE/COQ5 methyltransferase; Methyltransferase type 12; KEGG: rop:ROP_07100 putative methyltransferase.
  
     0.444
Tpau_3097
KEGG: saq:Sare_1463 hypothetical protein.
  
     0.420
Tpau_0830
KEGG: nfa:nfa6440 hypothetical protein.
  
     0.417
Tpau_1132
PFAM: UvrD/REP helicase; KEGG: rha:RHA1_ro06376 ATP-dependent DNA helicase; Belongs to the helicase family. UvrD subfamily.
 
    0.403
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
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