Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Tpau_0694KEGG: rer:RER_16750 hypothetical protein. (133 aa)    
Predicted Functional Partners:
Tpau_0695
PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: rha:RHA1_ro02027 cysteine synthase.
       0.836
Tpau_0516
KEGG: nfa:nfa53740 hypothetical protein.
  
     0.703
Tpau_1171
TIGRFAM: DivIVA domain; KEGG: rer:RER_41650 hypothetical protein.
  
     0.702
Tpau_4225
Glycoprotein; KEGG: rha:RHA1_ro03643 glycoprotein.
  
   
 0.702
Tpau_1068
KEGG: mab:MAB_1363 hypothetical protein.
  
     0.691
Tpau_0693
KEGG: rer:RER_16740 hypothetical protein; TIGRFAM: DNA binding domain protein, excisionase family; PFAM: regulatory protein MerR.
       0.684
Tpau_1881
KEGG: rha:RHA1_ro06826 secreted alanine rich protein.
  
     0.684
Tpau_0142
KEGG: rer:RER_01850 hypothetical protein.
  
     0.664
Tpau_2865
KEGG: rop:ROP_65380 hypothetical membrane protein.
  
     0.659
Tpau_0365
KEGG: nfa:nfa54850 hypothetical protein.
  
     0.625
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
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