Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Tpau_0746KEGG: mav:MAV_4996 hypothetical protein. (273 aa)    
Predicted Functional Partners:
Tpau_0749
KEGG: mkm:Mkms_0152 hypothetical protein.
 
    0.987
Tpau_0747
KEGG: mbt:JTY_1130 putative membrane glycine and proline rich protein.
       0.778
Tpau_0748
KEGG: mul:MUL_0182 membrane glycine and proline rich protein.
       0.773
Tpau_0084
KEGG: msm:MSMEG_2697 hypothetical protein.
  
     0.757
Tpau_2927
KEGG: rha:RHA1_ro06456 hypothetical protein.
  
     0.723
Tpau_3062
PFAM: protein of unknown function UPF0089; KEGG: mab:MAB_1278 hypothetical protein.
  
     0.720
Tpau_0513
KEGG: rop:ROP_56120 hypothetical membrane protein.
  
     0.695
Tpau_3503
PFAM: acyl-ACP thioesterase; KEGG: nfa:nfa50880 hypothetical protein.
  
     0.679
Tpau_0502
KEGG: rha:RHA1_ro05516 hypothetical protein.
  
     0.672
Tpau_3332
Stf0 sulfotransferase; Catalyzes the sulfuryl group transfer from 3'- phosphoadenosine-5'-phosphosulfate (PAPS) to trehalose, leading to trehalose-2-sulfate (T2S).
  
     0.658
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
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