Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Tpau_0776KEGG: fal:FRAAL0902 hypothetical protein. (124 aa)    
Predicted Functional Partners:
Tpau_0777
Transcriptional regulator, XRE family; SMART: helix-turn-helix domain protein; KEGG: rha:RHA1_ro00561 DNA binding protein.
 
     0.795
Tpau_0778
PFAM: peptidase S15; KEGG: pen:PSEEN2773 alpha/beta fold family hydrolase.
 
     0.627
Tpau_0775
TIGRFAM: acetyl-CoA acetyltransferase; KEGG: rer:RER_56240 acetyl-CoA acyltransferase; PFAM: Thiolase; Belongs to the thiolase-like superfamily. Thiolase family.
       0.459
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
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