STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tpau_0778PFAM: peptidase S15; KEGG: pen:PSEEN2773 alpha/beta fold family hydrolase. (303 aa)    
Predicted Functional Partners:
Tpau_0776
KEGG: fal:FRAAL0902 hypothetical protein.
 
     0.627
Tpau_1168
PFAM: Erythromycin esterase; KEGG: dra:DR_A0345 hypothetical protein.
   
    0.567
Tpau_0185
1-phosphofructokinase; KEGG: mkm:Mkms_0090 ribokinase-like domain- containing protein; TIGRFAM: 1-phosphofructokinase; PFAM: PfkB domain protein; Belongs to the carbohydrate kinase PfkB family.
   
    0.533
Tpau_0777
Transcriptional regulator, XRE family; SMART: helix-turn-helix domain protein; KEGG: rha:RHA1_ro00561 DNA binding protein.
       0.532
Tpau_0618
KEGG: nca:Noca_1011 4-carboxymuconolactone decarboxylase; TIGRFAM: 4-carboxymuconolactone decarboxylase; PFAM: Carboxymuconolactone decarboxylase; alpha/beta hydrolase fold.
 
 0.473
Tpau_3966
KEGG: rha:RHA1_ro04489 PHA depolymerase; TIGRFAM: poly(3-hydroxyalkanoate) depolymerase; PFAM: alpha/beta hydrolase fold.
 
 0.417
Tpau_0890
KEGG: mab:MAB_0768 hypothetical protein.
 
 0.413
Tpau_0107
KEGG: rop:ROP_35350 glutamate synthase large subunit; PFAM: ferredoxin-dependent glutamate synthase; glutamate synthase alpha subunit domain protein; glutamate synthase; glutamine amidotransferase class-II.
       0.400
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
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