Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Tpau_0789PFAM: Amidase; KEGG: nfa:nfa33260 amidase; Belongs to the amidase family. (467 aa)    
Predicted Functional Partners:
gatB
glutamyl-tRNA(Gln) amidotransferase, B subunit; Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl- tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp- tRNA(Asn) or phospho-Glu-tRNA(Gln); Belongs to the GatB/GatE family. GatB subfamily.
 
 
 0.951
Tpau_0557
PFAM: Amidase; KEGG: rha:RHA1_ro04406 amidase.
  
  
 
0.927
Tpau_0680
PFAM: Amidase; KEGG: mkm:Mkms_5239 amidase.
  
  
  0.927
Tpau_1417
Agmatinase; KEGG: rer:RER_05760 agmatinase; TIGRFAM: agmatinase; PFAM: Arginase/agmatinase/formiminoglutamase; Belongs to the arginase family.
    
 0.902
Tpau_1571
PFAM: acylphosphatase; KEGG: nfa:nfa41730 putative acylphosphatase.
    
  0.902
Tpau_1013
PFAM: thioesterase superfamily protein; KEGG: pen:PSEEN2794 phenylacetic acid degradation protein.
    
  0.900
gatC
glutamyl-tRNA(Gln) amidotransferase, C subunit; Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl- tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp- tRNA(Asn) or phospho-Glu-tRNA(Gln); Belongs to the GatC family.
 
 
 0.839
Tpau_0790
TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: extracellular solute-binding protein family 3; binding-protein-dependent transport systems inner membrane component; KEGG: mkm:Mkms_5030 polar amino acid ABC transporter, inner membrane subunit; SMART: extracellular solute-binding protein family 3.
       0.778
Tpau_0791
KEGG: rha:RHA1_ro01895 ABC amino acid transporter, ATP-binding component; PFAM: ABC transporter related; SMART: AAA ATPase.
       0.774
Tpau_0792
PFAM: pyridoxamine 5'-phosphate oxidase-related FMN- binding; KEGG: mjl:Mjls_0718 pyridoxamine 5'-phosphate oxidase-related, FMN-binding.
       0.638
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
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