Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Tpau_0793KEGG: nca:Noca_2310 PhzF family phenazine biosynthesis protein; TIGRFAM: phenazine biosynthesis protein PhzF family; PFAM: Phenazine biosynthesis PhzC/PhzF protein. (276 aa)    
Predicted Functional Partners:
Tpau_0792
PFAM: pyridoxamine 5'-phosphate oxidase-related FMN- binding; KEGG: mjl:Mjls_0718 pyridoxamine 5'-phosphate oxidase-related, FMN-binding.
       0.776
Tpau_0789
PFAM: Amidase; KEGG: nfa:nfa33260 amidase; Belongs to the amidase family.
       0.634
Tpau_0790
TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: extracellular solute-binding protein family 3; binding-protein-dependent transport systems inner membrane component; KEGG: mkm:Mkms_5030 polar amino acid ABC transporter, inner membrane subunit; SMART: extracellular solute-binding protein family 3.
       0.634
Tpau_0791
KEGG: rha:RHA1_ro01895 ABC amino acid transporter, ATP-binding component; PFAM: ABC transporter related; SMART: AAA ATPase.
       0.634
Tpau_0107
KEGG: rop:ROP_35350 glutamate synthase large subunit; PFAM: ferredoxin-dependent glutamate synthase; glutamate synthase alpha subunit domain protein; glutamate synthase; glutamine amidotransferase class-II.
     
 0.492
Tpau_3348
PFAM: iron permease FTR1; Peptidase M75, Imelysin; KEGG: mab:MAB_1159 putative iron permease FTR1.
  
    0.487
Tpau_0788
KEGG: fre:Franean1_4112 ArsR family transcriptional regulator; PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR.
  
  
 0.470
Tpau_0787
PFAM: Activator of Hsp90 ATPase 1 family protein; KEGG: fre:Franean1_4113 activator of HSP90 ATPase 1 family protein.
       0.446
Tpau_0786
Adenylate/guanylate cyclase with integral membrane sensor; KEGG: mab:MAB_1459c hypothetical protein; PFAM: adenylyl cyclase class-3/4/guanylyl cyclase; histidine kinase HAMP region domain protein; SMART: histidine kinase HAMP region domain protein; adenylyl cyclase class-3/4/guanylyl cyclase.
       0.445
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
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