STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tpau_0830KEGG: nfa:nfa6440 hypothetical protein. (847 aa)    
Predicted Functional Partners:
Tpau_0829
KEGG: nfa:nfa6430 hypothetical protein.
 
     0.865
Tpau_0831
KEGG: rha:RHA1_ro04970 hypothetical protein; PFAM: phosphoesterase PA-phosphatase related; SMART: phosphoesterase PA-phosphatase related.
       0.801
Tpau_1263
Myosin; KEGG: rha:RHA1_ro01457 myosin.
  
     0.757
Tpau_0828
KEGG: mva:Mvan_5040 major facilitator superfamily transporter.
 
     0.670
Tpau_1047
Integral membrane sensor signal transduction histidine kinase; KEGG: rer:RER_21360 two-component histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein.
 
     0.654
Tpau_0827
KEGG: rop:ROP_50320 hypothetical protein.
       0.622
Tpau_0349
KEGG: rer:RER_10670 penicillin-binding protein.
 
     0.619
Tpau_4190
KEGG: rop:ROP_32270 hypothetical membrane protein.
  
     0.576
Tpau_0904
KEGG: rer:RER_19310 hypothetical protein.
  
     0.565
Tpau_0119
TIGRFAM: RecB family nuclease, putative; KEGG: nfa:nfa1140 hypothetical protein.
  
     0.563
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.