Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Tpau_0834KEGG: mkm:Mkms_2745 hypothetical protein. (383 aa)    
Predicted Functional Partners:
Tpau_0835
PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: nfa:nfa6510 putative ribosomal RNA methyltransferase.
 
   
 0.661
Tpau_0836
KEGG: rer:RER_46200 hypothetical protein.
       0.570
Tpau_0528
PFAM: ribosomal RNA adenine methylase transferase; KEGG: cjk:jk1436 23S rRNA methyltransferase; SMART: Ribosomal RNA adenine methylase transferase- like; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family.
   
    0.536
Tpau_0672
KEGG: nfa:nfa51640 hypothetical protein.
  
     0.481
Tpau_2803
TIGRFAM: competence protein ComEA helix-hairpin- helix repeat protein; PFAM: Soluble ligand binding domain; helix-hairpin- helix motif; KEGG: rop:ROP_10140 putative DNA-binding protein; SMART: Helix-hairpin-helix DNA-binding class 1.
  
    0.474
Tpau_2240
KEGG: rop:ROP_69240 hypothetical membrane protein.
  
     0.470
Tpau_1594
Urea amidolyase related protein; SMART: Allophanate hydrolase subunit 2; Allophanate hydrolase subunit 1; TIGRFAM: urea amidolyase related protein; KEGG: msm:MSMEG_2187 UreA amidolyase; PFAM: Allophanate hydrolase subunit 2; Allophanate hydrolase subunit 1.
  
  
 0.446
Tpau_3520
Allophanate hydrolase subunit 2; KEGG: ach:Achl_0175 UreA amidolyase related protein; PFAM: Allophanate hydrolase subunit 2; Allophanate hydrolase subunit 1; SMART: Allophanate hydrolase subunit 2; Allophanate hydrolase subunit 1.
  
  
 0.446
whiB-4
Transcription factor WhiB; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA.
   
  
 0.445
Tpau_4221
KEGG: mva:Mvan_6060 hypothetical protein.
  
   
 0.445
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
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