STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tpau_0881Hypothetical protein; KEGG: spn:SP_1772 cell wall surface anchor family protein. (2309 aa)    
Predicted Functional Partners:
Tpau_3378
KEGG: nfa:nfa8520 hypothetical protein.
 
 0.834
Tpau_1406
KEGG: mab:MAB_0672c hypothetical protein.
 
 
 0.795
Tpau_2367
PFAM: Mammalian cell entry related domain protein; KEGG: nfa:nfa11150 putative Mce family protein.
  
 
   0.791
Tpau_1490
PFAM: cutinase; KEGG: msm:MSMEG_1403 cutinase superfamily protein.
 
 
 0.790
Tpau_1333
Hypothetical protein; KEGG: rha:RHA1_ro05481 protease.
 
  
 0.788
Tpau_2062
Hypothetical protein; KEGG: similar to CG16995 CG16995-PA.
 
  
 0.788
Tpau_3796
PFAM: Mammalian cell entry related domain protein; KEGG: rop:ROP_18060 putative Mce family protein.
  
 
   0.788
Tpau_2242
KEGG: nfa:nfa51010 hypothetical protein.
 
 
 0.784
Tpau_1687
PFAM: Ion transport 2 domain protein; KEGG: esi:Exig_2746 ion transport 2 domain- containing protein.
 
  
 0.780
Tpau_3794
PFAM: Mammalian cell entry related domain protein; KEGG: rop:ROP_18080 putative Mce family protein.
  
 
   0.779
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.