Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Tpau_0919KEGG: cai:Caci_5177 hypothetical protein. (713 aa)    
Predicted Functional Partners:
Tpau_0920
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; NAD-dependent epimerase/dehydratase; KEGG: ace:Acel_0687 short-chain dehydrogenase/reductase SDR.
 
     0.949
Tpau_0921
KEGG: mlu:Mlut_01000 L-threonine aldolase; PFAM: aromatic amino acid beta-eliminating lyase/threonine aldolase.
 
   
 0.934
Tpau_0917
PFAM: protein of unknown function DUF1470; KEGG: stp:Strop_4227 hypothetical protein.
 
     0.567
lysS
TIGRFAM: lysyl-tRNA synthetase; KEGG: sma:SAV_4749 lysyl-tRNA synthetase; PFAM: Lysyl-tRNA synthetase class 1c; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
     0.517
Tpau_0918
PFAM: amino acid permease-associated region; KEGG: mlu:Mlut_00990 amino acid transporter.
       0.466
Tpau_4109
KEGG: nca:Noca_4603 hypothetical protein.
  
     0.449
Tpau_0331
KEGG: msm:MSMEG_0067 hypothetical protein.
  
     0.446
Tpau_3073
KEGG: rer:RER_27080 ABC transporter permease protein.
  
     0.444
Tpau_0922
KEGG: rha:RHA1_ro06212 hypothetical protein.
       0.433
Tpau_0923
KEGG: rop:ROP_62730 hypothetical protein.
       0.433
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
Server load: medium (44%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.