STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tpau_0920PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; NAD-dependent epimerase/dehydratase; KEGG: ace:Acel_0687 short-chain dehydrogenase/reductase SDR. (237 aa)    
Predicted Functional Partners:
Tpau_0919
KEGG: cai:Caci_5177 hypothetical protein.
 
     0.949
Tpau_0921
KEGG: mlu:Mlut_01000 L-threonine aldolase; PFAM: aromatic amino acid beta-eliminating lyase/threonine aldolase.
 
     0.858
Tpau_0918
PFAM: amino acid permease-associated region; KEGG: mlu:Mlut_00990 amino acid transporter.
       0.467
Tpau_0922
KEGG: rha:RHA1_ro06212 hypothetical protein.
       0.433
Tpau_0923
KEGG: rop:ROP_62730 hypothetical protein.
       0.433
Tpau_4229
PFAM: Aldehyde Dehydrogenase; Proline dehydrogenase; KEGG: ckp:ckrop_0287 delta-1-pyrroline-5- carboxylate dehydrogenase; Belongs to the aldehyde dehydrogenase family.
   
    0.418
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
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