Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Tpau_0934KEGG: kra:Krad_0790 hypothetical protein. (140 aa)    
Predicted Functional Partners:
Tpau_0933
KEGG: mlo:mll2787 hypothetical protein.
       0.773
Tpau_3799
KEGG: rer:RER_07940 3Fe-4S ferredoxin.
  
     0.575
Tpau_2121
KEGG: sen:SACE_3425 hypothetical protein.
  
     0.541
dnaE2
DNA polymerase III, alpha subunit; DNA polymerase involved in damage-induced mutagenesis and translesion synthesis (TLS). It is not the major replicative DNA polymerase.
       0.537
Tpau_3682
PFAM: regulatory protein TetR; KEGG: bte:BTH_II1794 transcriptional regulator.
  
     0.530
Tpau_1927
PFAM: RDD domain containing protein; KEGG: bcv:Bcav_3212 FHA domain containing protein.
  
     0.486
Tpau_0774
Hypothetical protein; KEGG: kra:Krad_1450 acyltransferase 3.
  
     0.453
Tpau_1615
PFAM: acyltransferase 3; KEGG: kra:Krad_1450 acyltransferase 3.
  
     0.450
Tpau_0707
KEGG: kra:Krad_0189 hypothetical protein.
  
     0.444
Tpau_1348
SMART: PA14 domain protein; KEGG: ote:Oter_0060 hypothetical protein.
  
     0.403
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
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