Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Tpau_0940PFAM: protein of unknown function DUF308 membrane; KEGG: nfa:nfa31070 hypothetical protein. (192 aa)    
Predicted Functional Partners:
Tpau_0939
tRNA/rRNA methyltransferase (SpoU); Could methylate the ribose at the nucleotide 34 wobble position in tRNA; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. TrmL subfamily.
       0.620
Tpau_0156
PFAM: Rieske [2Fe-2S] iron-sulphur domain; KEGG: rop:ROP_39230 hypothetical protein.
 
     0.618
Tpau_3803
KEGG: mab:MAB_1289c hypothetical protein.
  
     0.586
folD
Methylenetetrahydrofolate dehydrogenase (NADP(+)); Catalyzes the oxidation of 5,10-methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10- methenyltetrahydrofolate to 10-formyltetrahydrofolate.
       0.556
Tpau_0942
KEGG: fra:Francci3_0659 hypothetical protein.
       0.555
Tpau_3323
PFAM: MgtC/SapB transporter; KEGG: mab:MAB_3593 Mg2+ transport P-type ATPase C MgtC.
  
  
 0.555
Tpau_3062
PFAM: protein of unknown function UPF0089; KEGG: mab:MAB_1278 hypothetical protein.
  
     0.505
Tpau_0943
KEGG: rop:ROP_62460 hypothetical protein.
 
     0.495
Tpau_0513
KEGG: rop:ROP_56120 hypothetical membrane protein.
  
     0.478
Tpau_2927
KEGG: rha:RHA1_ro06456 hypothetical protein.
  
     0.450
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
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