Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Tpau_0945PFAM: major facilitator superfamily MFS_1; KEGG: mab:MAB_1429 major facilitator superfamily permease. (409 aa)    
Predicted Functional Partners:
Tpau_0948
TIGRFAM: exodeoxyribonuclease III Xth; exodeoxyribonuclease III; KEGG: nfa:nfa9310 putative exonuclease; PFAM: Endonuclease/exonuclease/phosphatase.
       0.780
Tpau_0946
PFAM: guanine-specific ribonuclease N1 and T1; KEGG: rer:RER_20080 guanyl-specific ribonuclease.
       0.770
Tpau_0947
KEGG: fre:Franean1_5433 hypothetical protein.
       0.762
trpS
tryptophanyl-tRNA synthetase; Catalyzes the attachment of tryptophan to tRNA(Trp). Belongs to the class-I aminoacyl-tRNA synthetase family.
       0.713
Tpau_0950
Ribonuclease; KEGG: msm:MSMEG_1658 ribonuclease, putative; TIGRFAM: ribonuclease; PFAM: ribonuclease BN.
       0.633
metXA
Homoserine O-acetyltransferase; Transfers an acetyl group from acetyl-CoA to L-homoserine, forming acetyl-L-homoserine.
       0.518
Tpau_3309
PFAM: major facilitator superfamily MFS_1; KEGG: rer:RER_44550 MFS transporter.
  
     0.403
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
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