Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-expression
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[Homology]
Score
Tpau_0946PFAM: guanine-specific ribonuclease N1 and T1; KEGG: rer:RER_20080 guanyl-specific ribonuclease. (151 aa)    
Predicted Functional Partners:
Tpau_0947
KEGG: fre:Franean1_5433 hypothetical protein.
 
 
 0.972
Tpau_0948
TIGRFAM: exodeoxyribonuclease III Xth; exodeoxyribonuclease III; KEGG: nfa:nfa9310 putative exonuclease; PFAM: Endonuclease/exonuclease/phosphatase.
       0.834
Tpau_0945
PFAM: major facilitator superfamily MFS_1; KEGG: mab:MAB_1429 major facilitator superfamily permease.
       0.770
trpS
tryptophanyl-tRNA synthetase; Catalyzes the attachment of tryptophan to tRNA(Trp). Belongs to the class-I aminoacyl-tRNA synthetase family.
       0.752
Tpau_0357
KEGG: mab:MAB_2469 hypothetical protein.
  
 
 0.646
Tpau_0950
Ribonuclease; KEGG: msm:MSMEG_1658 ribonuclease, putative; TIGRFAM: ribonuclease; PFAM: ribonuclease BN.
       0.623
Tpau_2099
PFAM: extracellular solute-binding protein family 1; KEGG: rop:ROP_66360 putative ABC transporter substrate-binding protein.
  
     0.513
metXA
Homoserine O-acetyltransferase; Transfers an acetyl group from acetyl-CoA to L-homoserine, forming acetyl-L-homoserine.
       0.483
Tpau_3679
PFAM: alpha/beta hydrolase fold; KEGG: rop:ROP_18600 hypothetical protein.
  
     0.461
Tpau_4027
KEGG: mab:MAB_1173c hypothetical protein.
  
     0.461
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
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