Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Tpau_0951PFAM: amino acid permease-associated region; KEGG: kra:Krad_0773 amino acid permease-associated region. (494 aa)    
Predicted Functional Partners:
Tpau_0952
PFAM: peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; KEGG: nfa:nfa9380 putative penicillin-binding protein; Belongs to the peptidase S11 family.
       0.778
Tpau_0954
KEGG: mab:MAB_0945 EmrB/QacA family drug resistance transporter; TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1.
  
   0.707
Tpau_0953
KEGG: mkm:Mkms_4541 MarR family transcriptional regulator; PFAM: regulatory protein MarR; SMART: regulatory protein MarR.
       0.686
Tpau_1225
PFAM: UspA domain protein; KEGG: mkm:Mkms_1198 UspA domain-containing protein.
 
  
 0.627
Tpau_0682
Putrescine oxidase; KEGG: mlu:Mlut_10320 monoamine oxidase; PFAM: amine oxidase; FAD dependent oxidoreductase; HI0933 family protein.
 
 
 
 0.571
Tpau_0955
PFAM: Sucraseferredoxin family protein; KEGG: rer:RER_19650 hypothetical protein.
 
     0.568
Tpau_0956
KEGG: nfa:nfa48300 hypothetical protein.
       0.508
Tpau_3953
PFAM: amino acid permease-associated region; KEGG: rop:ROP_43930 putative amino acid transporter.
  
   
 0.498
Tpau_1307
Transcriptional regulator, PucR family; PFAM: purine catabolism PurC domain protein; KEGG: rop:ROP_56700 putative CdaR family transcriptional regulator.
 
     0.466
Tpau_0957
PFAM: transcriptional regulator PadR family protein; KEGG: rha:RHA1_ro06022 transcriptional regulator.
       0.439
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
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