Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Tpau_0957PFAM: transcriptional regulator PadR family protein; KEGG: rha:RHA1_ro06022 transcriptional regulator. (204 aa)    
Predicted Functional Partners:
Tpau_0958
KEGG: rha:RHA1_ro06023 multidrug efflux transport protein; TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1.
 
     0.858
Tpau_0956
KEGG: nfa:nfa48300 hypothetical protein.
       0.659
Tpau_0955
PFAM: Sucraseferredoxin family protein; KEGG: rer:RER_19650 hypothetical protein.
       0.658
Tpau_0954
KEGG: mab:MAB_0945 EmrB/QacA family drug resistance transporter; TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1.
       0.511
Tpau_0953
KEGG: mkm:Mkms_4541 MarR family transcriptional regulator; PFAM: regulatory protein MarR; SMART: regulatory protein MarR.
       0.488
Tpau_1876
KEGG: nfa:nfa32410 hypothetical protein.
  
     0.451
Tpau_0952
PFAM: peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; KEGG: nfa:nfa9380 putative penicillin-binding protein; Belongs to the peptidase S11 family.
       0.440
Tpau_0951
PFAM: amino acid permease-associated region; KEGG: kra:Krad_0773 amino acid permease-associated region.
       0.439
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
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