Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Tpau_0963KEGG: sco:SCO0604 hypothetical protein. (382 aa)    
Predicted Functional Partners:
Tpau_0964
KEGG: nfa:nfa9460 succinate dehydrogenase iron- sulfur subunit; TIGRFAM: succinate dehydrogenase and fumarate reductase iron-sulfur protein.
       0.543
Tpau_0965
KEGG: rop:ROP_63050 succinate dehydrogenase flavoprotein subunit; TIGRFAM: succinate dehydrogenase or fumarate reductase, flavoprotein subunit; succinate dehydrogenase, flavoprotein subunit; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein.
       0.543
Tpau_0962
KEGG: ami:Amir_2083 response regulator receiver.
       0.514
Tpau_2380
KEGG: sco:SCO0224 hypothetical protein.
  
     0.502
Tpau_0966
PFAM: succinate dehydrogenase cytochrome b subunit; KEGG: rop:ROP_63060 succinate dehydrogenase hydrophobic membrane anchor protein.
       0.493
Tpau_0967
KEGG: rop:ROP_63070 succinate dehydrogenase cytochrome b subunit; TIGRFAM: succinate dehydrogenase, cytochrome b556 subunit; PFAM: succinate dehydrogenase cytochrome b subunit.
       0.486
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
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