Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
Experiments
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[Homology]
Score
Tpau_0974Hypothetical protein; KEGG: pjd:Pjdr2_3229 phytanoyl-CoA dioxygenase. (292 aa)    
Predicted Functional Partners:
Tpau_0975
KEGG: cai:Caci_0885 transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain.
 
    0.862
Tpau_0973
Hypothetical protein.
       0.778
Tpau_1635
PFAM: oxidoreductase domain protein; KEGG: ach:Achl_1753 oxidoreductase domain protein.
 
    0.638
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TIGRFAM: adenosine deaminase; KEGG: nfa:nfa9530 adenosine deaminase; PFAM: adenosine/AMP deaminase; Belongs to the metallo-dependent hydrolases superfamily. Adenosine and AMP deaminases family. Adenosine deaminase subfamily.
     
 0.524
Tpau_0107
KEGG: rop:ROP_35350 glutamate synthase large subunit; PFAM: ferredoxin-dependent glutamate synthase; glutamate synthase alpha subunit domain protein; glutamate synthase; glutamine amidotransferase class-II.
      
 0.515
Tpau_1354
KEGG: sen:SACE_4775 MerR family transcriptional regulator; PFAM: regulatory protein MerR; SMART: regulatory protein MerR.
  
     0.471
Tpau_3918
PFAM: protein of unknown function DUF990; KEGG: fal:FRAAL3906 putative integral membrane transport protein.
  
     0.452
Tpau_3917
PFAM: protein of unknown function DUF990; KEGG: fal:FRAAL3907 putative ABC-type uncharacterized transport system, permease component.
  
     0.441
Tpau_3564
PFAM: protein of unknown function DUF899 thioredoxin family protein; KEGG: rop:ROP_70390 hypothetical protein.
  
     0.419
Tpau_2125
KEGG: sen:SACE_2856 hypothetical protein.
  
     0.410
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
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