STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tpau_0986TIGRFAM: amidohydrolase; KEGG: rop:ROP_63210 putative amidohydrolase; PFAM: peptidase M20. (393 aa)    
Predicted Functional Partners:
Tpau_0985
Amidohydrolase; KEGG: rer:RER_20770 amidohydrolase; TIGRFAM: amidohydrolase; PFAM: peptidase dimerisation domain protein; peptidase M20; Belongs to the peptidase M20A family.
 
   
 0.894
Tpau_0984
PFAM: Enoyl-CoA hydratase/isomerase; KEGG: rer:RER_20760 enoyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family.
       0.847
Tpau_0983
Purine nucleotide phosphorylase; The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate.
     
 0.740
Tpau_0982
Glucose-1,6-bisphosphate synthase; KEGG: rop:ROP_63170 putative phosphoglucomutase; PFAM: phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II.
       0.707
Tpau_0981
KEGG: rer:RER_58340 hypothetical protein.
  
    0.575
dapD
2,3,4,5-tetrahydropyridine-2,6-dicarboxylateN-su ccinyltransferase; Catalyzes the conversion of the cyclic tetrahydrodipicolinate (THDP) into the acyclic N-succinyl-L-2-amino-6-oxopimelate using succinyl-CoA.
  
  
 0.407
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
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