Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Tpau_0988PFAM: AIG2 family protein; KEGG: rha:RHA1_ro06261 hypothetical protein. (166 aa)    
Predicted Functional Partners:
Tpau_0989
PFAM: pyridine nucleotide-disulphide oxidoreductase dimerisation region; FAD-dependent pyridine nucleotide- disulphide oxidoreductase; FAD dependent oxidoreductase; HI0933 family protein; KEGG: rer:RER_20810 oxidoreductase.
     
 0.768
Tpau_4235
KEGG: mva:Mvan_6070 hypothetical protein.
  
     0.699
Tpau_1085
KEGG: mab:MAB_3550c hypothetical protein.
  
     0.684
Tpau_3548
KEGG: rer:RER_48110 hypothetical protein.
  
     0.610
Tpau_1288
PFAM: Domain of unknown function DUF2017; KEGG: mab:MAB_1476 hypothetical protein.
  
     0.583
Tpau_0990
RNA polymerase, sigma-24 subunit, ECF subfamily; KEGG: sco:SCO7112 ECF family RNA polymerase sigma factor; TIGRFAM: RNA polymerase sigma-70 factor; RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein.
       0.552
Tpau_0564
KEGG: rop:ROP_43280 hypothetical membrane protein.
  
     0.537
Tpau_2658
PFAM: GCN5-related N-acetyltransferase; KEGG: rop:ROP_08280 hypothetical protein.
  
     0.513
Tpau_2678
PFAM: Polyketide cyclase/dehydrase; cyclase/dehydrase; KEGG: rop:ROP_08470 hypothetical protein.
  
     0.411
Tpau_0991
PFAM: NmrA family protein; KEGG: mjl:Mjls_5307 NmrA family protein.
       0.409
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
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