Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-expression
Experiments
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[Homology]
Score
Tpau_1016PFAM: LGFP repeat protein; KEGG: car:cauri_0314 putative secreted protein. (205 aa)    
Predicted Functional Partners:
Tpau_1918
KEGG: svi:Svir_09690 hypothetical protein.
  
     0.635
Tpau_0349
KEGG: rer:RER_10670 penicillin-binding protein.
  
     0.628
Tpau_4106
PFAM: GtrA family protein; KEGG: rha:RHA1_ro04079 hypothetical protein.
  
     0.566
Tpau_0903
RNA polymerase, sigma-24 subunit, ECF subfamily; KEGG: nfa:nfa8920 RNA polymerase sigma factor SigD; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Belongs to the sigma-70 factor family. ECF subfamily.
   
    0.561
Tpau_2638
KEGG: mkm:Mkms_3310 DivIVA family protein; TIGRFAM: DivIVA domain; PFAM: DivIVA family protein.
   
    0.515
Tpau_4020
PFAM: Protein of unknown function DUF2029; KEGG: rer:RER_03630 glycosyltransferase.
  
     0.503
Tpau_1112
KEGG: rha:RHA1_ro06347 hypothetical protein.
  
     0.489
Tpau_1015
PFAM: Carboxylesterase type B; KEGG: sgr:SGR_2081 putative carboxylesterase; Belongs to the type-B carboxylesterase/lipase family.
  
    0.483
Tpau_3378
KEGG: nfa:nfa8520 hypothetical protein.
  
    0.480
Tpau_0994
KEGG: msm:MSMEG_3688 hypothetical protein.
  
     0.474
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
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