Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Tpau_1020PFAM: NADPH-dependent FMN reductase; KEGG: cef:CE2756 hypothetical protein. (183 aa)    
Predicted Functional Partners:
Tpau_1021
Transcriptional regulator, XRE family; KEGG: aau:AAur_0978 helix-turn-helix domain- containing protein; PFAM: helix-turn-helix domain protein; Cupin 2 conserved barrel domain protein; SMART: helix-turn-helix domain protein.
       0.529
Tpau_1019
KEGG: mab:MAB_0680c hypothetical protein.
       0.526
Tpau_3780
PFAM: GCN5-related N-acetyltransferase; KEGG: rer:RER_05920 hypothetical protein.
 
    0.478
Tpau_1018
PFAM: regulatory protein TetR; KEGG: pla:Plav_0651 TetR family transcriptional regulator.
       0.402
Tpau_2978
KEGG: nfa:nfa18260 hypothetical protein.
  
  
 0.401
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
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