Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Tpau_1027PFAM: Endoribonuclease L-PSP; KEGG: bcv:Bcav_2495 endoribonuclease L-PSP. (131 aa)    
Predicted Functional Partners:
Tpau_1028
PFAM: Helix-turn-helix type 11 domain protein; regulatory protein DeoR; KEGG: sgr:SGR_6161 DeoR family transcriptional regulator.
 
     0.881
Tpau_1026
Hypothetical protein.
       0.570
Tpau_3724
PFAM: periplasmic binding protein; KEGG: ami:Amir_4782 periplasmic binding protein.
  
     0.510
Tpau_2594
Transcriptional regulator, LuxR family; KEGG: nfa:nfa18100 putative transcriptional regulator; PFAM: regulatory protein LuxR; Tetratricopeptide TPR_4; SMART: regulatory protein LuxR.
  
     0.469
Tpau_0246
SMART: serine/threonine protein kinase; KEGG: sen:SACE_4230 serine/threonine protein kinase.
  
     0.459
Tpau_1168
PFAM: Erythromycin esterase; KEGG: dra:DR_A0345 hypothetical protein.
  
     0.421
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
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