Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
lpqBPFAM: Lipoprotein LpqB, beta-propeller domain-like; Lipoprotein LpqB, GerMN domain; KEGG: rha:RHA1_ro06326 lipoprotein LpqB. (594 aa)    
Predicted Functional Partners:
Tpau_1076
Two component transcriptional regulator, winged helix family; KEGG: mjl:Mjls_1381 two component transcriptional regulator; PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver.
     
 0.890
Tpau_1077
Integral membrane sensor signal transduction histidine kinase; KEGG: rha:RHA1_ro06325 sensor histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein.
 
    0.870
Tpau_1079
KEGG: mab:MAB_3585c hypothetical protein.
       0.766
Tpau_0516
KEGG: nfa:nfa53740 hypothetical protein.
  
    0.761
Tpau_0171
KEGG: mab:MAB_0178 cutinase precursor.
 
     0.759
Tpau_0170
KEGG: nfa:nfa1860 hypothetical protein.
 
     0.756
Tpau_3306
KEGG: rer:RER_44250 hypothetical protein.
  
     0.756
Tpau_1115
KEGG: rha:RHA1_ro06355 hypothetical protein.
  
     0.752
Tpau_3265
KEGG: msm:MSMEG_5468 hypothetical protein.
  
     0.750
Tpau_1783
PFAM: cell wall arabinan synthesis protein; KEGG: rop:ROP_39470 arabinosyltransferase.
  
   
 0.744
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
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