Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Tpau_1085KEGG: mab:MAB_3550c hypothetical protein. (177 aa)    
Predicted Functional Partners:
Tpau_1084
Putative diguanylate cyclase; KEGG: rha:RHA1_ro06332 hypothetical protein; TIGRFAM: acyltransferase, WS/DGAT/MGAT; PFAM: protein of unknown function UPF0089; Belongs to the long-chain O-acyltransferase family.
     
 0.853
Tpau_2658
PFAM: GCN5-related N-acetyltransferase; KEGG: rop:ROP_08280 hypothetical protein.
  
     0.770
Tpau_3331
Chorismate mutase; KEGG: nfa:nfa49960 hypothetical protein; TIGRFAM: chorismate mutase; PFAM: Chorismate mutase.
  
     0.745
Tpau_0564
KEGG: rop:ROP_43280 hypothetical membrane protein.
  
     0.744
Tpau_0977
KEGG: rha:RHA1_ro06252 hypothetical protein.
  
     0.707
Tpau_0905
KEGG: mgi:Mflv_4910 hypothetical protein.
  
     0.698
Tpau_1288
PFAM: Domain of unknown function DUF2017; KEGG: mab:MAB_1476 hypothetical protein.
  
     0.693
Tpau_0988
PFAM: AIG2 family protein; KEGG: rha:RHA1_ro06261 hypothetical protein.
  
     0.684
Tpau_1512
KEGG: rop:ROP_08820 hypothetical membrane protein.
  
     0.679
Tpau_1083
KEGG: msm:MSMEG_1880 hypothetical protein.
       0.673
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
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