Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Tpau_1112KEGG: rha:RHA1_ro06347 hypothetical protein. (146 aa)    
Predicted Functional Partners:
Tpau_1797
KEGG: rha:RHA1_ro06774 hypothetical protein.
  
     0.711
Tpau_0672
KEGG: nfa:nfa51640 hypothetical protein.
  
     0.710
Tpau_2298
PFAM: Polyketide cyclase/dehydrase; KEGG: rer:RER_45260 hypothetical protein.
  
     0.689
Tpau_1111
KEGG: mab:MAB_3538 hypothetical protein; PFAM: diacylglycerol kinase catalytic region; SMART: diacylglycerol kinase catalytic region.
       0.685
Tpau_1918
KEGG: svi:Svir_09690 hypothetical protein.
  
     0.661
Tpau_1794
KEGG: rha:RHA1_ro06772 hypothetical protein.
  
     0.636
Tpau_0367
PFAM: protein of unknown function DUF1396; KEGG: mjl:Mjls_2429 hypothetical protein.
  
     0.622
Tpau_0132
KEGG: nfa:nfa1240 hypothetical protein.
  
     0.621
Tpau_2324
PFAM: protein of unknown function DUF1396; KEGG: mbt:JTY_1404 putative lipoprotein.
  
     0.620
Tpau_0902
KEGG: mab:MAB_3725c hypothetical protein.
  
     0.593
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
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