Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
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textmining
Assay-based Predictions
experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Tpau_1133KEGG: nfa:nfa55080 putative hydrolase. (200 aa)    
Predicted Functional Partners:
Tpau_1134
PFAM: Integrase catalytic region; KEGG: cms:CMS_2918 putative insertion element ISCmi3 transposase.
       0.634
Tpau_1131
PFAM: UvrD/REP helicase; KEGG: rha:RHA1_ro06375 ATP-dependent DNA helicase; Belongs to the helicase family. UvrD subfamily.
       0.479
Tpau_1132
PFAM: UvrD/REP helicase; KEGG: rha:RHA1_ro06376 ATP-dependent DNA helicase; Belongs to the helicase family. UvrD subfamily.
       0.479
Tpau_1136
PFAM: TAP domain protein; KEGG: nfa:nfa55080 putative hydrolase.
 
     0.455
Tpau_1839
KEGG: rop:ROP_68030 hypothetical protein; PFAM: type III restriction protein res subunit; SMART: DEAD-like helicase.
  
     0.423
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
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