Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Tpau_1145PFAM: extracellular solute-binding protein family 5; KEGG: nfa:nfa47580 hypothetical protein. (622 aa)    
Predicted Functional Partners:
mshB
1D-myo-inosityl-2-acetamido-2-deoxy-alpha-D-gluc opyranosidedeacetylase; Catalyzes the deacetylation of 1D-myo-inositol 2-acetamido-2- deoxy-alpha-D-glucopyranoside (GlcNAc-Ins) in the mycothiol biosynthesis pathway.
       0.836
Tpau_1147
KEGG: mav:MAV_1311 hypothetical protein.
       0.835
Tpau_1149
KEGG: rop:ROP_60070 hypothetical protein.
 
     0.829
Tpau_1148
TIGRFAM: 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit; 7,8-didemethyl-8-hydroxy-5- deazariboflavin synthase, CofG subunit; PFAM: Radical SAM domain protein; KEGG: rop:ROP_60060 7,8-didemethyl-8-hydroxy-5- deazariboflavine synthase; SMART: Elongator protein 3/MiaB/NifB.
       0.816
Tpau_1144
GTP-binding protein TypA; KEGG: rha:RHA1_ro05933 GTP binding elongation factor; TIGRFAM: GTP-binding protein TypA; small GTP- binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor G domain protein; elongation factor Tu domain 2 protein.
  
    0.787
lpqB
PFAM: Lipoprotein LpqB, beta-propeller domain-like; Lipoprotein LpqB, GerMN domain; KEGG: rha:RHA1_ro06326 lipoprotein LpqB.
  
   
 0.735
Tpau_1115
KEGG: rha:RHA1_ro06355 hypothetical protein.
  
     0.733
Tpau_1794
KEGG: rha:RHA1_ro06772 hypothetical protein.
  
     0.732
Tpau_0876
KEGG: mbt:JTY_3504 hypothetical protein.
  
     0.730
Tpau_3265
KEGG: msm:MSMEG_5468 hypothetical protein.
  
     0.727
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
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