Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Tpau_1172KEGG: rop:ROP_60320 hypothetical protein. (55 aa)    
Predicted Functional Partners:
Tpau_3935
KEGG: rop:ROP_42280 hypothetical protein.
  
     0.771
Tpau_1173
PFAM: Methyltransferase type 11; KEGG: sen:SACE_1994 rRNA guanine-N1- methyltransferase.
       0.665
Tpau_1171
TIGRFAM: DivIVA domain; KEGG: rer:RER_41650 hypothetical protein.
       0.649
Tpau_2386
KEGG: rer:RER_32690 hypothetical protein.
  
     0.636
Tpau_3909
KEGG: msm:MSMEG_6171 hypothetical protein.
  
     0.532
Tpau_1077
Integral membrane sensor signal transduction histidine kinase; KEGG: rha:RHA1_ro06325 sensor histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein.
  
     0.447
Tpau_0846
KEGG: mab:MAB_0883c hypothetical protein.
  
    0.405
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
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