Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Tpau_1197KEGG: nfa:nfa26160 hypothetical protein. (332 aa)    
Predicted Functional Partners:
Tpau_1198
PFAM: regulatory protein TetR; KEGG: rer:RER_37140 TetR family transcriptional regulator.
 
     0.888
Tpau_2746
PFAM: regulatory protein TetR; KEGG: rer:RER_07500 TetR family transcriptional regulator.
  
     0.717
Tpau_0418
PFAM: coagulation factor 5/8 type domain protein; KEGG: rha:RHA1_ro05192 hypothetical protein.
  
     0.589
Tpau_0414
KEGG: rha:RHA1_ro05188 hypothetical protein.
  
     0.584
Tpau_2945
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: rer:RER_56310 ferredoxin--NADP(+) reductase.
 
    0.570
Tpau_3670
PFAM: Carboxymuconolactone decarboxylase; KEGG: rer:RER_15470 hypothetical protein.
  
     0.518
Tpau_2535
PFAM: Limonene-12-epoxide hydrolase; KEGG: mmi:MMAR_1973 hypothetical protein.
  
     0.507
Tpau_3208
PFAM: Limonene-12-epoxide hydrolase; KEGG: mmi:MMAR_1973 hypothetical protein.
  
     0.480
Tpau_1196
KEGG: rer:RER_41480 hypothetical protein.
       0.475
Tpau_1199
PFAM: extracellular solute-binding protein family 1; KEGG: msm:MSMEG_5061 extracellular solute-binding protein.
       0.472
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
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