Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
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[Homology]
Score
Tpau_1220PFAM: major facilitator superfamily MFS_1; KEGG: ami:Amir_3856 major facilitator superfamily MFS_1. (377 aa)    
Predicted Functional Partners:
Tpau_1221
KEGG: mab:MAB_3709c hypothetical protein.
       0.773
Tpau_1219
PFAM: Polyketide cyclase/dehydrase; KEGG: rha:RHA1_ro05887 hypothetical protein.
       0.727
Tpau_1222
KEGG: nfa:nfa17840 putative transporter ATPase; TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; Haloacid dehalogenase domain protein hydrolase.
     
 0.579
Tpau_1223
Hypothetical protein.
       0.573
Tpau_1224
Hypothetical protein.
       0.458
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
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