STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tpau_1225PFAM: UspA domain protein; KEGG: mkm:Mkms_1198 UspA domain-containing protein. (301 aa)    
Predicted Functional Partners:
Tpau_0679
PFAM: amino acid permease-associated region; KEGG: msm:MSMEG_1625 amino acid transporter, putative.
 
  
 0.740
Tpau_4193
KEGG: rha:RHA1_ro03442 hypothetical protein.
     
 0.664
Tpau_0951
PFAM: amino acid permease-associated region; KEGG: kra:Krad_0773 amino acid permease-associated region.
 
  
 0.636
Tpau_1307
Transcriptional regulator, PucR family; PFAM: purine catabolism PurC domain protein; KEGG: rop:ROP_56700 putative CdaR family transcriptional regulator.
 
     0.626
Tpau_0682
Putrescine oxidase; KEGG: mlu:Mlut_10320 monoamine oxidase; PFAM: amine oxidase; FAD dependent oxidoreductase; HI0933 family protein.
 
     0.596
Tpau_0357
KEGG: mab:MAB_2469 hypothetical protein.
  
     0.556
Tpau_1226
KEGG: mno:Mnod_5602 hypothetical protein.
       0.545
Tpau_0707
KEGG: kra:Krad_0189 hypothetical protein.
  
     0.426
Tpau_4192
Peptidoglycan glycosyltransferase; KEGG: nfa:nfa55570 putative penicillin-binding protein; PFAM: glycosyl transferase family 51; penicillin- binding protein transpeptidase.
     
 0.422
Tpau_1423
PFAM: integrase family protein; KEGG: rop:ROP_54360 phage integrase family protein; Belongs to the 'phage' integrase family.
  
   
 0.410
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
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