STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tpau_1281Transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: fal:FRAAL2999 LysR family transcriptional regulator. (290 aa)    
Predicted Functional Partners:
Tpau_3971
PFAM: regulatory protein LysR; KEGG: rha:RHA1_ro00176 LysR family transcriptional regulator.
  
     0.762
Tpau_0208
Transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: mmi:MMAR_4902 putative regulatory protein; Belongs to the LysR transcriptional regulatory family.
  
     0.756
Tpau_1802
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate- binding; KEGG: mav:MAV_0094 transcriptional regulator, LysR family protein.
  
     0.633
Tpau_1280
SMART: helicase c2; DEAD-like helicase; KEGG: rer:RER_38870 ATP-dependent DNA helicase DinG.
     
 0.567
Tpau_1282
KEGG: rsa:RSal33209_1522 hypothetical protein.
       0.561
Tpau_1283
KEGG: mab:MAB_3300c TetR family transcriptional regulator.
   
   0.551
Tpau_1277
PFAM: beta-lactamase domain protein; KEGG: rha:RHA1_ro08118 beta-lactamase.
  
    0.455
glgB
1,4-alpha-glucan branching enzyme; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.
       0.441
glgE
Alpha amylase catalytic region; Maltosyltransferase that uses maltose 1-phosphate (M1P) as the sugar donor to elongate linear or branched alpha-(1->4)-glucans. Is involved in a branched alpha-glucan biosynthetic pathway from trehalose, together with TreS, Mak and GlgB.
       0.441
Tpau_1284
KEGG: rha:RHA1_ro03056 hypothetical protein.
       0.429
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
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