Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Tpau_1304PFAM: AMP-dependent synthetase and ligase; KEGG: rer:RER_40980 long-chain fatty-acid--CoA ligase. (591 aa)    
Predicted Functional Partners:
Tpau_1315
PFAM: MaoC domain protein dehydratase; Beta- ketoacyl synthase; Acyl transferase; domain of unknown function DUF1729; KEGG: nfa:nfa12570 putative fatty acid synthase.
  
 0.945
Tpau_2193
TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) synthase III; KEGG: nfa:nfa52820 3-oxoacyl-(acyl carrier protein) synthase III; PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III domain protein; 3-Oxoacyl-[acyl-carrier- protein (ACP)] synthase III; Belongs to the thiolase-like superfamily. FabH family.
    
 0.808
Tpau_1031
PFAM: Carbamoyl-phosphate synthase L chain ATP- binding; biotin carboxylase domain protein; ATP-dependent carboxylate-amine ligase domain protein ATP-grasp; biotin/lipoyl attachment domain-containing protein; Carbamoyl-phosphate synthetase large chain domain protein; KEGG: rer:RER_21210 acyl-CoA carboxylase alpha chain.
    
 0.806
Tpau_1864
PFAM: AMP-dependent synthetase and ligase; KEGG: cai:Caci_4379 AMP-dependent synthetase and ligase.
 
 
0.727
Tpau_2858
PFAM: AMP-dependent synthetase and ligase; KEGG: sma:SAV_1346 acid:CoA ligase.
 
 
0.725
Tpau_3969
PFAM: AMP-dependent synthetase and ligase; KEGG: rha:RHA1_ro04492 acyl-CoA synthetase.
 
 
0.725
Tpau_2680
PFAM: AMP-dependent synthetase and ligase; KEGG: rha:RHA1_ro01121 long-chain-fatty-acid--CoA ligase.
  
  
 
0.615
Tpau_0176
PFAM: carboxyl transferase; KEGG: rha:RHA1_ro04066 propionyl-CoA carboxylase.
    
  0.605
Tpau_1043
PFAM: carboxyl transferase; KEGG: nfa:nfa9940 putative acyl-CoA carboxylase beta subunit.
    
  0.605
deaD
DEAD/DEAH box helicase domain protein; DEAD-box RNA helicase involved in various cellular processes at low temperature, including ribosome biogenesis, mRNA degradation and translation initiation.
   
   0.604
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.