Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Tpau_1306DNA helicase; KEGG: rha:RHA1_ro01677 DNA helicase. (1410 aa)    
Predicted Functional Partners:
Tpau_0845
KEGG: rha:RHA1_ro04983 hypothetical protein.
  
     0.752
Tpau_0943
KEGG: rop:ROP_62460 hypothetical protein.
 
     0.752
Tpau_1368
PFAM: Myo-inositol catabolism IolB domain protein; KEGG: cgb:cg0201 hypothetical protein.
   
    0.705
Tpau_3374
KEGG: nfa:nfa8180 hypothetical protein.
  
    0.698
Tpau_3378
KEGG: nfa:nfa8520 hypothetical protein.
 
     0.689
Tpau_3618
KEGG: rer:RER_17430 MarR family transcriptional regulator; PFAM: regulatory protein MarR; SMART: regulatory protein MarR.
  
    0.675
Tpau_2066
KEGG: mjl:Mjls_0871 hypothetical protein.
 
     0.657
Tpau_3651
KEGG: msm:MSMEG_0923 hypothetical protein.
  
     0.642
Tpau_1131
PFAM: UvrD/REP helicase; KEGG: rha:RHA1_ro06375 ATP-dependent DNA helicase; Belongs to the helicase family. UvrD subfamily.
 
 
 0.630
Tpau_1444
Acyltransferase 3; KEGG: kra:Krad_1450 acyltransferase 3.
  
    0.613
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
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