Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Tpau_1307Transcriptional regulator, PucR family; PFAM: purine catabolism PurC domain protein; KEGG: rop:ROP_56700 putative CdaR family transcriptional regulator. (491 aa)    
Predicted Functional Partners:
Tpau_1308
KEGG: rop:ROP_56630 4-aminobutyrate aminotransferase; TIGRFAM: 4-aminobutyrate aminotransferase; PFAM: aminotransferase class-III; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
   
 0.752
Tpau_1225
PFAM: UspA domain protein; KEGG: mkm:Mkms_1198 UspA domain-containing protein.
 
     0.621
Tpau_0679
PFAM: amino acid permease-associated region; KEGG: msm:MSMEG_1625 amino acid transporter, putative.
 
     0.620
Tpau_1309
KEGG: rha:RHA1_ro05596 succinate-semialdehyde dehydrogenase (NAD(P)+); PFAM: Aldehyde Dehydrogenase; Belongs to the aldehyde dehydrogenase family.
     
 0.541
Tpau_0357
KEGG: mab:MAB_2469 hypothetical protein.
  
     0.515
Tpau_3970
Putative transcriptional regulator, PucR family; KEGG: rha:RHA1_ro04493 hypothetical protein.
 
     0.467
Tpau_0951
PFAM: amino acid permease-associated region; KEGG: kra:Krad_0773 amino acid permease-associated region.
 
     0.466
Tpau_0683
Transcriptional regulator, TetR family; PFAM: regulatory protein TetR; Tetracyclin repressor domain protein; KEGG: mlu:Mlut_10310 transcriptional regulator, TetR family.
  
     0.455
Tpau_3784
Putative transcriptional regulator, PaaX family; PFAM: PaaX domain protein domain; KEGG: mab:MAB_0920 putative repressor in the phenylacetic acid catabolism.
  
    0.400
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
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