STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tpau_1319KEGG: rop:ROP_03480 hypothetical protein. (145 aa)    
Predicted Functional Partners:
Tpau_1320
Transcriptional regulator, MerR family; KEGG: nfa:nfa22770 putative transcriptional regulator; PFAM: regulatory protein MerR; SMART: regulatory protein MerR.
 
     0.908
Tpau_0394
KEGG: nfa:nfa8260 hypothetical protein; PFAM: AAA ATPase central domain protein; Tetratricopeptide TPR_4; SMART: AAA ATPase.
  
 0.584
Tpau_1752
KEGG: cai:Caci_2076 AAA ATPase central domain protein; PFAM: AAA ATPase central domain protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; Belongs to the AAA ATPase family.
  
 0.584
Tpau_3711
Adenosinetriphosphatase; PFAM: AAA ATPase central domain protein; KEGG: rer:RER_15150 ATPase; SMART: AAA ATPase; Belongs to the AAA ATPase family.
  
 0.584
Tpau_2823
KEGG: rha:RHA1_ro03102 hypothetical protein.
  
     0.427
Tpau_4086
PFAM: Domain of unknown function DUF1905; KEGG: rop:ROP_36430 hypothetical protein.
 
     0.421
Tpau_1318
PFAM: histidine triad (HIT) protein; KEGG: bcv:Bcav_2569 histidine triad (HIT) protein.
       0.415
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.