Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Tpau_1326PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: mab:MAB_1530 lipoprotein LppS. (406 aa)    
Predicted Functional Partners:
Tpau_3561
Domain of unknown function DUF1794; May play a role in the intracellular transport of hydrophobic ligands.
  
     0.664
Tpau_0553
KEGG: rer:RER_06180 D-alanyl-D-alanine carboxypeptidase; TIGRFAM: D-alanyl-D-alanine carboxypeptidase/D- alanyl-D-alanine-endopeptidase; PFAM: peptidase S13 D-Ala-D-Ala carboxypeptidase C.
  
  
 0.593
Tpau_3331
Chorismate mutase; KEGG: nfa:nfa49960 hypothetical protein; TIGRFAM: chorismate mutase; PFAM: Chorismate mutase.
  
     0.561
Tpau_1896
PFAM: Protein of unknown function DUF2029; KEGG: rer:RER_28550 arabinosyltransferase AftC.
  
     0.550
Tpau_1327
KEGG: pzu:PHZ_c2602 hypothetical protein.
       0.545
Tpau_2908
PFAM: Methionine synthase vitamin-B12 independent; KEGG: rer:RER_23790 hypothetical protein.
  
     0.526
Tpau_1085
KEGG: mab:MAB_3550c hypothetical protein.
  
     0.519
Tpau_4234
Cell wall hydrolase/autolysin; KEGG: rha:RHA1_ro03652 N-acetylmuramoyl-L-alanine amidase; PFAM: cell wall hydrolase/autolysin; Peptidoglycan- binding domain 1 protein; SMART: cell wall hydrolase/autolysin.
 
   
 0.519
Tpau_1257
PFAM: Protein of unknown function DUF2550; KEGG: mpa:MAP2449c hypothetical protein.
  
     0.514
Tpau_1512
KEGG: rop:ROP_08820 hypothetical membrane protein.
  
     0.509
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
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