STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tpau_1349citrate/H+ symporter, CitMHS family; KEGG: rer:RER_13860 citrate transporter; TIGRFAM: citrate/H+ symporter, CitMHS family; PFAM: Citrate transporter. (478 aa)    
Predicted Functional Partners:
Tpau_1350
Signal transduction histidine kinase regulating citrate/malate metabolism; KEGG: cmi:CMM_2877 putative two-component system, sensor kinase; PFAM: ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein.
 
   
 0.854
Tpau_1351
KEGG: cgt:cgR_0089 hypothetical protein; PFAM: response regulator receiver; SMART: response regulator receiver.
 
     0.814
Tpau_1352
KEGG: msm:MSMEG_2381 hypothetical protein.
       0.503
Tpau_1348
SMART: PA14 domain protein; KEGG: ote:Oter_0060 hypothetical protein.
       0.418
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.