Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Tpau_1356KEGG: sco:SCO2723 ABC transporter ATP-binding protein; PFAM: ABC transporter related; X-Pro dipeptidyl- peptidase domain protein; peptidase S15; SMART: AAA ATPase. (814 aa)    
Predicted Functional Partners:
Tpau_1355
KEGG: sma:SAV_5345 ABC transporter integral membrane protein.
 
 
 0.971
Tpau_1354
KEGG: sen:SACE_4775 MerR family transcriptional regulator; PFAM: regulatory protein MerR; SMART: regulatory protein MerR.
       0.773
Tpau_2678
PFAM: Polyketide cyclase/dehydrase; cyclase/dehydrase; KEGG: rop:ROP_08470 hypothetical protein.
  
     0.559
Tpau_3470
KEGG: mab:MAB_0395c hypothetical protein.
  
    0.554
Tpau_0100
KEGG: rha:RHA1_ro02954 anibiotic ABC transporter efflux pump.
  
 
 0.543
Tpau_1085
KEGG: mab:MAB_3550c hypothetical protein.
  
     0.520
Tpau_0024
KEGG: sen:SACE_0036 hypothetical protein.
  
     0.492
Tpau_1357
PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: sco:SCO6988 oxidoreductase.
       0.492
Tpau_3589
PFAM: protein of unknown function DUF574; KEGG: sen:SACE_5650 hypothetical protein.
  
     0.492
Tpau_3649
KEGG: cur:cur_0209 hypothetical protein.
  
   
 0.458
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
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