Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Tpau_1403KEGG: rop:ROP_59440 hypothetical protein. (323 aa)    
Predicted Functional Partners:
Tpau_1404
KEGG: cjk:jk0504 hypothetical protein.
       0.728
Tpau_1401
KEGG: nfa:nfa13270 ribose-5-phosphate isomerase B; TIGRFAM: ribose 5-phosphate isomerase; sugar- phosphate isomerase, RpiB/LacA/LacB family; PFAM: Ribose/galactose isomerase.
       0.602
Tpau_1402
DNA-(apurinic or apyrimidinic site) lyase; KEGG: rop:ROP_10910 putative DNA glycosylase; PFAM: DNA glycosylase/AP lyase, H2TH DNA-binding; Formamidopyrimidine-DNA glycosylase catalytic domain protein; Belongs to the FPG family.
       0.597
Tpau_3314
KEGG: mkm:Mkms_2781 chorismate mutase; TIGRFAM: chorismate mutase; PFAM: Chorismate mutase.
   
    0.559
Tpau_1405
Hypothetical protein.
       0.541
Tpau_1400
PFAM: peptidase M48 Ste24p; KEGG: rer:RER_38200 hypothetical protein.
     
 0.492
Tpau_1406
KEGG: mab:MAB_0672c hypothetical protein.
  
    0.468
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
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