STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tpau_1403KEGG: rop:ROP_59440 hypothetical protein. (323 aa)    
Predicted Functional Partners:
Tpau_1404
KEGG: cjk:jk0504 hypothetical protein.
       0.729
Tpau_1401
KEGG: nfa:nfa13270 ribose-5-phosphate isomerase B; TIGRFAM: ribose 5-phosphate isomerase; sugar- phosphate isomerase, RpiB/LacA/LacB family; PFAM: Ribose/galactose isomerase.
       0.610
Tpau_1402
DNA-(apurinic or apyrimidinic site) lyase; KEGG: rop:ROP_10910 putative DNA glycosylase; PFAM: DNA glycosylase/AP lyase, H2TH DNA-binding; Formamidopyrimidine-DNA glycosylase catalytic domain protein; Belongs to the FPG family.
       0.590
Tpau_3314
KEGG: mkm:Mkms_2781 chorismate mutase; TIGRFAM: chorismate mutase; PFAM: Chorismate mutase.
   
    0.571
Tpau_1405
Hypothetical protein.
       0.542
Tpau_1400
PFAM: peptidase M48 Ste24p; KEGG: rer:RER_38200 hypothetical protein.
     
 0.488
Tpau_1406
KEGG: mab:MAB_0672c hypothetical protein.
  
    0.467
Tpau_3863
Band 7 protein; KEGG: cef:CE2656 hypothetical protein; PFAM: band 7 protein; SMART: band 7 protein.
     
 0.412
lpqB
PFAM: Lipoprotein LpqB, beta-propeller domain-like; Lipoprotein LpqB, GerMN domain; KEGG: rha:RHA1_ro06326 lipoprotein LpqB.
      
 0.402
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.