Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Tpau_1408KEGG: nca:Noca_2964 HhH-GPD family protein; TIGRFAM: HhH-GPD family protein; PFAM: HhH-GPD family protein. (196 aa)    
Predicted Functional Partners:
Tpau_1407
KEGG: mab:MAB_2112 hypothetical protein.
       0.778
Tpau_0436
KEGG: rop:ROP_15710 putative endonuclease IV; PFAM: Xylose isomerase domain protein TIM barrel; SMART: AP endonuclease family 2.
 
 
 0.697
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
   
 
 0.568
Tpau_1409
PFAM: Enoyl-CoA hydratase/isomerase; KEGG: mab:MAB_4431 enoyl-CoA hydratase/isomerase family protein; Belongs to the enoyl-CoA hydratase/isomerase family.
       0.549
Tpau_2173
KEGG: rop:ROP_05710 putative 5'-3' exonuclease; PFAM: 5'-3' exonuclease, N-terminal resolvase-like domain; 5'-3' exonuclease, SAM-fold domain; SMART: 5'-3' exonuclease; Helix-hairpin-helix domain protein class 2.
 
 
 
 0.479
Tpau_0470
KEGG: fal:FRAAL1883 putative exodeoxyribonuclease III; TIGRFAM: exodeoxyribonuclease III Xth; exodeoxyribonuclease III; PFAM: Endonuclease/exonuclease/phosphatase.
  
 0.474
Tpau_0895
PFAM: Endonuclease/exonuclease/phosphatase; Twin- arginine translocation pathway, signal sequence, subgroup; KEGG: rer:RER_56610 hypothetical protein.
  
 0.474
Tpau_0948
TIGRFAM: exodeoxyribonuclease III Xth; exodeoxyribonuclease III; KEGG: nfa:nfa9310 putative exonuclease; PFAM: Endonuclease/exonuclease/phosphatase.
  
 0.474
Tpau_1302
PFAM: Endonuclease/exonuclease/phosphatase; KEGG: rer:RER_56610 hypothetical protein.
  
 0.474
Tpau_1303
PFAM: Endonuclease/exonuclease/phosphatase; KEGG: rer:RER_56610 hypothetical protein.
  
 0.474
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
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