Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Tpau_1414PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: rha:RHA1_ro03531 tryptophan 2-monooxygenase. (565 aa)    
Predicted Functional Partners:
Tpau_1415
PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: rer:RER_05780 hydrolase.
 
  
 0.993
Tpau_1417
Agmatinase; KEGG: rer:RER_05760 agmatinase; TIGRFAM: agmatinase; PFAM: Arginase/agmatinase/formiminoglutamase; Belongs to the arginase family.
 
   
 0.869
lysA
Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine.
     
 0.808
Tpau_1416
PFAM: amino acid permease-associated region; KEGG: rha:RHA1_ro03529 amino acid transporter.
   
 
 0.790
Tpau_1832
Histone deacetylase; KEGG: rer:RER_28020 acetoin utilization protein; PFAM: histone deacetylase superfamily.
   
 0.647
Tpau_1418
KEGG: rop:ROP_33220 putative Xre family DNA-binding protein; PFAM: helix-turn-helix domain protein; Cupin 2 conserved barrel domain protein; SMART: helix-turn-helix domain protein.
     
 0.560
Tpau_0770
SNF2-related protein; KEGG: rha:RHA1_ro01653 helicase; PFAM: SNF2-related protein; zinc finger SWIM domain protein; helicase domain protein; SMART: DEAD-like helicase; helicase domain protein.
    
 0.427
Tpau_1215
SNF2-related protein; KEGG: nfa:nfa10310 putative helicase; PFAM: SNF2-related protein; helicase domain protein; SMART: DEAD-like helicase; helicase domain protein.
    
 0.427
Tpau_0935
PFAM: Patatin; KEGG: cai:Caci_2574 patatin.
  
     0.413
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
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