Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
Tpau_1417Agmatinase; KEGG: rer:RER_05760 agmatinase; TIGRFAM: agmatinase; PFAM: Arginase/agmatinase/formiminoglutamase; Belongs to the arginase family. (325 aa)    
Predicted Functional Partners:
Tpau_4229
PFAM: Aldehyde Dehydrogenase; Proline dehydrogenase; KEGG: ckp:ckrop_0287 delta-1-pyrroline-5- carboxylate dehydrogenase; Belongs to the aldehyde dehydrogenase family.
  
 0.928
Tpau_3499
KEGG: nca:Noca_1780 D-amino-acid oxidase; PFAM: FAD dependent oxidoreductase.
 
 
 0.927
Tpau_0680
PFAM: Amidase; KEGG: mkm:Mkms_5239 amidase.
 
  
 0.913
Tpau_0557
PFAM: Amidase; KEGG: rha:RHA1_ro04406 amidase.
    
 0.902
Tpau_0789
PFAM: Amidase; KEGG: nfa:nfa33260 amidase; Belongs to the amidase family.
    
 0.902
Tpau_1308
KEGG: rop:ROP_56630 4-aminobutyrate aminotransferase; TIGRFAM: 4-aminobutyrate aminotransferase; PFAM: aminotransferase class-III; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
 
 0.875
Tpau_1414
PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: rha:RHA1_ro03531 tryptophan 2-monooxygenase.
 
   
 0.869
Tpau_1415
PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: rer:RER_05780 hydrolase.
   
 0.852
Tpau_0107
KEGG: rop:ROP_35350 glutamate synthase large subunit; PFAM: ferredoxin-dependent glutamate synthase; glutamate synthase alpha subunit domain protein; glutamate synthase; glutamine amidotransferase class-II.
    
 0.825
Tpau_1416
PFAM: amino acid permease-associated region; KEGG: rha:RHA1_ro03529 amino acid transporter.
  
 
 0.823
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
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