Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Tpau_1420KEGG: sco:SCO7497 transcriptional regulator; PFAM: AraC protein arabinose-binding/dimerisation; SMART: Helix-turn-helix, AraC domain. (257 aa)    
Predicted Functional Partners:
Tpau_1421
PFAM: protein of unknown function DUF81; KEGG: sco:SCO7496 integral membrane protein.
 
     0.821
Tpau_1419
PFAM: Enoyl-CoA hydratase/isomerase; KEGG: rop:ROP_16190 putative enoyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family.
       0.778
Tpau_0195
KEGG: ach:Achl_0269 transcriptional regulator, ArgP, LysR family; TIGRFAM: transcriptional regulator, ArgP family; PFAM: regulatory protein LysR; LysR substrate- binding.
  
    0.499
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
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